Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs74547446 | chr19:11595905 | A/C | 6.4E-6 | 489 | 15.87 | 18.68 | 14.7 | KM Plot |
| THCA | rs74578681 | chr10:11815694 | G/A | 8.26E-6 | 486 | 15.97 | 14.9 | 10.93 | KM Plot |
| THCA | rs74587973 | chr3:46782352 | C/A | 5.98E-8 | 483 | 15.9 | 15.97 | 5.8 | KM Plot |
| THCA | rs74595025 | chr6:24431802 | A/G | 6.43E-7 | 477 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs74605972 | chr5:355099 | G/A | 6.81E-5 | 487 | 15.07 | 21.1 | 20.77 | KM Plot |
| THCA | rs74645414 | chr2:48074333 | G/A | 1.13E-7 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs74671042 | chr11:26653029 | G/A | 0.00029 | 489 | 15.77 | 16.62 | 9 | KM Plot |
| THCA | rs74679493 | chr5:81258955 | A/G | 6.59E-5 | 484 | 15.9 | 15 | 17.97 | KM Plot |
| THCA | rs74693089 | chr13:108893661 | A/G | 1.99E-9 | 485 | 15.23 | 17.77 | 14.67 | KM Plot |
| THCA | rs747022 | chr10:100128173 | A/G | 0 | 490 | 15.97 | 14.82 | 5.8 | KM Plot |
| THCA | rs74703738 | chr5:96204209 | T/A | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs74714120 | chr1:41714878 | C/T | 2.02E-7 | 489 | 14.93 | 17.72 | 17.47 | KM Plot |
| THCA | rs74733171 | chr2:241539943 | C/T | 2.16E-11 | 484 | 15.9 | 15.42 | 19.27 | KM Plot |
| THCA | rs74748336 | chr14:59758919 | G/A | 1.4E-8 | 488 | 16.38 | 12.62 | 5.45 | KM Plot |
| THCA | rs74749600 | chr10:104732996 | T/C | 6.21E-9 | 489 | 15.3 | 17.63 | 32.1 | KM Plot |